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Report for Sequence Feature Glyma06g13081

Feature Type:gene_model
Chromosome:Gm06
Start:10220270
stop:10225045
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g13081
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53210AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:21586606-21588941 REVERSE LENGTH=364 SoyBaseE_val: 8.00E-108ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010374GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex development SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG4029 KOG Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 JGI ISS
PTHR11534Panther MYOGENIC FACTOR JGI ISS
PTHR11534:SF7Panther MYOGENIC FACTOR MYF-5 JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_B9RIM0UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RIM0_RICCO SoyBaseE_val: 1.00E-159ISS
UniRef100_UPI0002339489UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339489 related cluster n=1 Tax=unknown RepID=UPI0002339489 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g13081
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g13081 not represented in the dataset
Glyma06g13081 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13081
ParalogEvidenceComments
Glyma04g41710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13081 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g125500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g13081
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g13081
>Glyma06g13081.2   sequence type=transcript   gene model=Glyma06g13081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCATAATAACTACCTACATAAAAGTTGCATTATACTATTACCCATTATCCAACAGCAGCAGCATCCATTGTTTTACACACCATACCTGTATCATTACAATAGAATAGTAGAAGCTAGTATAAAACCCTTTTCTTTCTACATTCTCTCCCTCCCTCCCTTCTCAAAACTTCTTTTTCAGTTTTGATTATTGTCACAGTCTGATACTGCTTCTGCTTCTGCTTCTGTGAGAGATAGTAATAGTAATAGTAGTATAGAATAGATCCCTAGCTAGGCATCTAACGGTTTAAACCACATATTTTGAAAAAGGGACCATAACATATCAGTATTCAGTAGTAGTAGTTGATGGCGATCGTTTAGTCTCTATCACATCAACACCCCCCTCTCATATTTACTCCTTTTTCATCACCTATTTTTTCTTGATCTTGAGAACTTCATTTCTTGGTCCCTTTCTCATTCTCATCCCCAATCAAAAACATTTTTCCAGTACTTTCCTTCGCAGGTTTCACGGAGAAGAAGATCGAATTAGCCAACAAACTCCTAATTAAGCCTCCACCATGGACGATAATAGCTTATGCGATATTTTCGACGACAAAGAGTTTGGGAGCGACCATTTTGGTGGGGATGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCACCGATTTCCCTCCTCTCATTAACGAAGAAGCTGTTGTTGCAGCAGCTGTCTCCAAAGACATTAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCAAGTGCTCCACTAGATTCCGAAACTGAGCTTGAAACCTCTCCCAAAACCAAGAGACAGAAGCTTACTCCTACTACTCCTGAGGAAGCAAACCCAGATGGACAACAAAAGATGTCTCACATTACCGTTGAACGCAACAGGAGAAAGCAAATGAACGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTGCAAGCCCTGGAGGCCAAGAAGCAAAGAAAAGTCTACTGCGAAGTCCTGAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTAGGAAGCCCCCTTTAAGCCCGAGACTAAACTTGCCTATAAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGCTGCATCAGCAGCAGCATGGCTACAACAACATCATTTCACCAACCATATCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGATAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCGGGTCCTCATGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTCTGAAGATTATAACGGCACTTGAAGATCTTGCGCTTGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAATTATAAAAGATGGGTTATGTTTTGTCCAGAGTCCAGACCAAACATCAGCTTGCACGCATCCCTCTCTCTCTCTCTCTCTTCTCTTATTGCGCTGTACGTACCTTGCTGTACAAATAACAGAGAACATGGGAAGAGCCATATTTAATTTTTCAACCATTTATCATTTTCTTTCTTTTTAATTAATTATTACAGCAATTGCTAGTGTAATTCCTCATGATGACAAGTATTAGCTAGTTATTATAGAGTGACACTACTCTCTTGTAATTGTTTTTTTGGAAGGAACTACTACTCTCTTGTAATTGACCACCGTCCCAGCTTTGATTTGTGTATGAATTAGATTTCCATTTCCCA
Coding sequences of Glyma06g13081
>Glyma06g13081.1   sequence type=CDS   gene model=Glyma06g13081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATAATAGCTTATGCGATATTTTCGACGACAAAGAGTTTGGGAGCGACCATTTTGGTGGGGATGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCACCGATTTCCCTCCTCTCATTAACGAAGAAGCTGTTGTTGCAGCAGCTGTCTCCAAAGACATTAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCAAGTGCTCCACTAGATTCCGAAACTGAGCTTGAAACCTCTCCCAAAACCAAGAGACAGAAGCTTACTCCTACTACTCCTGAGGAAGCAAACCCAGATGGACAACAAAAGATGTCTCACATTACCGTTGAACGCAACAGGAGAAAGCAAATGAACGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTGCAAGCCCTGGAGGCCAAGAAGCAAAGAAAAGTCTACTGCGAAGTCCTGAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTAGGAAGCCCCCTTTAAGCCCGAGACTAAACTTGCCTATAAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGCTGCATCAGCAGCAGCATGGCTACAACAACATCATTTCACCAACCATATCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGATAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCGGGTCCTCATGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTCTGAAGATTATAACGGCACTTGAAGATCTTGCGCTTGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA

>Glyma06g13081.2   sequence type=CDS   gene model=Glyma06g13081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGATAATAGCTTATGCGATATTTTCGACGACAAAGAGTTTGGGAGCGACCATTTTGGTGGGGATGATCTCTTCGCCATTTTGGAGAGCCTAGAATCGGACTTCACCACCGATTTCCCTCCTCTCATTAACGAAGAAGCTGTTGTTGCAGCAGCTGTCTCCAAAGACATTAATAACGAGGATGTCTCAAGATTGGTGTCTCAAAAGTCAACCTCTTCAAGTGCTCCACTAGATTCCGAAACTGAGCTTGAAACCTCTCCCAAAACCAAGAGACAGAAGCTTACTCCTACTACTCCTGAGGAAGCAAACCCAGATGGACAACAAAAGATGTCTCACATTACCGTTGAACGCAACAGGAGAAAGCAAATGAACGAACACTTGACCGTGTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCGATAATTGGAGGAGTGGTTGATTACATCAGCGAGTTGCAGCAGGTGCTGCAAGCCCTGGAGGCCAAGAAGCAAAGAAAAGTCTACTGCGAAGTCCTGAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCACCACTGAGTCCTAGGAAGCCCCCTTTAAGCCCGAGACTAAACTTGCCTATAAGCCCAAGAACTCCACAACCAGGAAGCCCTTACAGGCCAAGGCTGCATCAGCAGCAGCATGGCTACAACAACATCATTTCACCAACCATATCCAACGTCTCTCTCGACCCTTCTCCCACTTCTTCTGCCAACTCCTCCATCAACGATAACATCAACGAGCTTGTTGCAAACTCCAAGTCCCCCACTGCTGACGTGGAGGTCAAGTTTTCGGGTCCTCATGTTCTTCTCAAAACGGTGTCTCAACGAATTCCAGGGCAGGCTCTGAAGATTATAACGGCACTTGAAGATCTTGCGCTTGAAATCGTTCATGTCAACATTAACTGTGCTGCGGATGATACCATGCTAAACTCATTCACTATCAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTACTAA
Predicted protein sequences of Glyma06g13081
>Glyma06g13081.1   sequence type=predicted peptide   gene model=Glyma06g13081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDNSLCDIFDDKEFGSDHFGGDDLFAILESLESDFTTDFPPLINEEAVVAAAVSKDINNEDVSRLVSQKSTSSSAPLDSETELETSPKTKRQKLTPTTPEEANPDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQALEAKKQRKVYCEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLHQQQHGYNNIISPTISNVSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEIVHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFY*

>Glyma06g13081.2   sequence type=predicted peptide   gene model=Glyma06g13081   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDNSLCDIFDDKEFGSDHFGGDDLFAILESLESDFTTDFPPLINEEAVVAAAVSKDINNEDVSRLVSQKSTSSSAPLDSETELETSPKTKRQKLTPTTPEEANPDGQQKMSHITVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVDYISELQQVLQALEAKKQRKVYCEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLHQQQHGYNNIISPTISNVSLDPSPTSSANSSINDNINELVANSKSPTADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEIVHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFY*






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